Under current EU rules, Member States can apply a flat-rate VAT scheme (Council Directive 2006/112/EC)  which allows farmers to charge their customers a standard amount – or  ‘flat-rate compensation' - on their agricultural products and services.  In turn, those farmers cannot claim compensation for VAT they have  already paid. The scheme is supposed to be used by farmers who are  likely to experience administrative difficulties when following normal  VAT rules or the simplified rules provided for small companies.
However, Germany applies the flat-rate scheme by default to all  farmers, including owners of large farms, regardless of whether they  encounter such administrative difficulties. The only farmers who cannot  benefit from the scheme are commercial livestock breeders. In addition,  according to figures from the German Supreme Audit Institution (Bundesrechnungshof),  German farmers to whom the flat-rate scheme applies are also being  overcompensated for the VAT they have paid. This is not allowed under EU  rules and generates major distortions of competition in the internal  market, in particular in favour of big farmers who do not encounter  difficulties with the normal VAT arrangements.
Background
On 8 March 2018,  the European Commission opened an EU infringement procedure by sending a  formal request to the German authorities to amend its VAT legislation. A  reasoned opinion was sent in January 2019 which Germany has not complied with.
For More Information
-  On the key decisions in the July 2019 infringements package, see a full MEMO: INF/19/4251.
-  On the general infringements procedures, see MEMO/12/12.
-  On the EU infringement procedure.